Shewanella frigidimarina (strain NCIMB 400)

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella; Shewanella frigidimarina

Average proteome isoelectric point is 6.17

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All


Virtual 2D-PAGE plot for 3,990 proteins (isoelectric point calculated using IPC_method)

Get csv file with sequences according given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 18 different methods for calculating isoelectric point
Protein with the lowest isoelectric point:
>tr|Q088L7|Q088L7_SHEFN Putative outer membrane adhesin like proteiin
MGSITTSKNGILSASESSVTITINNETKELQLGQVVPAGAIVASSNNLGFVITFDDGTIFNSANIPNDESINTLADNLDDTIVAQVADQQALDEIEALQALIASGEDPTTDLPETAAGTPTANQGDFGYVAVTRDGDETLANSGYDTTGQAAAPTAVTQEEALTENDSPSVLVNDAITVGEDQVASGNVL
VNDTDADSDLSVVTFEVDGQTYPAGTEVTLEGGILIINEDGSYTFTPYENWNGTVPVITYTTNTGVTATLTIEVTPVDDVSVLVNDSNTVAEDTVATGNVLDNDGDVDSDLSVVTFEVDGQTYPASTEVTLEGGVLIINEDGSYTFTPNENWNGTVPVITYTTNTGVTATLTIEVTPVDDVSVLVNDSNT
VAEDTVATGNVLDNDGDVDSDLSVVTFEVDGQTYPASTEVTLEGGVLIINEDGSYTFTPNENWNGTVPVITYTTNTGVTATLTIEITPVEDPTVTVNDVVTVSEDTPASGNVLDNDSDPDSDLSVVTFEVDGQTYPAGTEVTLEGGVLIINEDGSYTFTPNENWNGTVPVITYTTNTGVTATLTIEVTPT
NDAPTIDVVANDFTENSAVDGDVAATYTTFDEDGDALTVDFTPGSNDDGYYALVNGEVVLTQAGADLVNNGGTLPAVDLTVSDGSLTGQDSDTPGIAGQNDAPTIDVVANDFTENSAVDGDVAATYTTFDEDGDALTVDFTPGSNTDGYYALVNGEVVLTQAGADLVNNGGTLPPVDLTVSDGNLTGQDS
DTPVITPTNDAPTIDVVANDFTENSAVDGDVAATYTTFDEDGDALTVDFTPGSNDDGYYALVNGEVVLTQAGADLVNNGGTLPPVDLTVSDGSLTGQDSDTPGIAGQNDAPTIDVVANDFTENSAVDGDVAATYTTFDEDGDLLTVDFTPGSNTDGYYALVNGEVVLTQAGADLVNNGGTLPPVDLTVSD
GSLTGQDSDTPVITPTNDAPTIDVVANDFTENSAVDGDVAATYTTFDEDGDALTVDFTPGSNTDGYYALVNGEVVLTQAGADLVNNGGTLPPVDLTVSDGSLTGQDSDTPGIAGQNDAPTIDVVANDFTENSAVDGDVAATYTTFDEDGDALTVDFTPGSNTDGYYALVNGEVVLTQAGADLVNNGGTLP
PVDLTVSDGNLTGQDSDTPVITPTNDAPTIDVVANDFTENSAVDGDVAATYTTFDEDGDALTVDFTPGSNTDGYYALVNGEVVLTQAGADLVNNGGTLPPVDLTVSDGSLTGQDSDTPGIAGQNDAPTIDVVANDFTENSAVDGDVAATYTTFDEDGDALTVDFTPGSNTDGYYALVNGEVVLTQAGADL
VNNGGTLPPVDLTVSDGSLTGQDSDTPVITPTNDAPTIDVVANDFTENSAVDGDVAATYTTFDEDGDLLTVDFTPGSNTDGYYALVNGEVVLTQAGADLVNNGGTLPPVDLTVSDGSLTGQDSDTPVITPTNDAPTIDVVANDFTENSAVDGDVAATYTTFDEDGDALTVDFTPGSNDDGYYALVNGEVV
LTQAGADLVNNGGTLPPVDLTVSDGSLTGQDSDTPGIAGQNDAPTIDVVANDFTENSAVDGDVAATYTTFDEDGDALTVDFTPGSNTDGYYALVNGEVVLTQAGADLVNNGGTLPPVDLTVSDGNLTGQDSDTPVITPTNDAPTIDVVANDFTENSAVDGDVAATYTTFDEDGDALTVDFTPGSNTDGYY
ALVNGEVVLTQAGADLVNNGGTLPPVDLTVSDGSLTGQDSDTPVITPTNDAPTIDVVANDFTENSAVDGDVAATYTTFDEDGDALTVDFTPGSNTDGYYALVNGEVVLTQAGADLVNNGGTLPPVDLTVSDGSLTGQDSDTPGIAGQNDAPTIDVVANDFTENSAVDGDVAATYTTFDEDGDALTVDFTP
GSNDDGYYALVNGEVVLTQAGADLVNNGGTLPPVDLTVSDGSLTGQDSDTPGIAGQNDAPTIDVVANDFTENSAVDGDVAATYTTFDEDGDALTVDFTPGSNTDGYYALVNGEVVLTQAGADLVNNGGTLPPVDLTVSDGSLTGQDSDTPVITPTNDAPTIDVVANDFTENSAVDGDVAATYTTFDEDGD
LLTVDFTPGSNDDGYYALVNGEVVLTQAGADLVNNGGTLPPVDLTVSDGSLTGQDSDTPGIAGQNDAPTIDVVANDFTENSAVDGDVAATYTTFDEDGDALTVDFTPGSNTDGYYALVNGEVVLTQAGADLVNNGGTLPPVDLTVSDGSLTGQDSDTPVITPTNDAPTIDVVANDFTENSAVDGDVAATY
TTFDEDGDLLTVDFTPGSNDDGYYALVNGEVVLTQAGADLVNNGGTLPPVDLTVSDGSLTGQDSDTPGIAGQNDAPTIDVVANDFTENSAVDGDVAATYTTFDEDGDALTVDFTPGSNTDGYYALVNGEVVLTQAGADLVNNGGTLPPVDLTVSDGSLTGQDSDTPGIAGQNDAPTIDVVANDFTENSAV
DGDVAATYTTFDEDGDALTVDFTPGSNDDGYYALVNGEVVLTQAGADLVNNGGTLPPVDLTVSDGSLTGQDSDTPVIAPTNDAPTIDVVANDFTENSAVDGDVAATYTTFDEDGDALTVDFTPGSNDDGYYALVNGEVVLTQAGADLVNNEGTLPPVDLTVSDGNLTGQDSDTPVITPINDTPVSDSYSF
NYLENSTDSTVIGTVAATDPEGTPVTYSIVSGDSNGWFEIDPVTGVISLTPAGVAAVANDFEALANVHNLVVGASDGVNTTNINVTLTELDVNEGPEFTPPAGETSYSFNYLENSSDSTVIGTVVATDPEGKDVSYSIVSGDSNGWFEIDPVTGVISLTPAGVAAVANDFEALANVHNLVVGASDGVNTT
NINVTLTELDVNEGPEFTPPAGETSYSFNYLENSSDSTVIGTVVATDPEGKDVSYSIVSGDSNGWFEIDPVTGVISLTPAGVAAVANDFEALANVHNLVVGASDGVNTTNINVTLTELDVNEGPEFNPPAGETSYSFNYLENSSDSTVIGTVAATDPEGKDVSYSIVSGDSNGWFEIDPVTGVISLTPAG
VAAVANDFEALANVHNLVVGASDGVNTTNINVTLTELDVNEGPEFTPPAGETSYSFNYLENSTDSTVIGTVAATDPEGKDVSYSIVSGDSNGWFEIDPVTGVISLTPAGVAAVANDFEALANVHNLVVGASDGVNTTNINVTLTELDVNEGPEFTPPAGETSYSFNYLENSSDSTVIGTVVATDPEGKDV
SYSIVSGDSNGWFEIDPVTGVISLTPAGVAAVANDFEALANVHNLVVGASDGVNTTNINVTLTELDVNEGPEFNPPAGETSYSFNYLENSSDSTVIGTVAATDPEGKDVSYSIVSGDTNGWFEIDPVTGIISLTPAGVAAVANDFEALANVHNLVVGASDGVNTTNINVTLTELDVNEGPEFTPPAGETS
YSFNYLENSTDSTVIGTVAATDPEGKDVSYSIVSGDSNGWFEIDPVTGVISLTPAGVAAVANDFEALANVHNLVVGASDGVNTTNINVTLTELDVNEGPEFTPPAGETSYSFNYLENSSDSTVIGTVVATDPEGKDVSYSIVSGDSNGWFEIDPVTGVISLTPAGVAAVANDFEALANVHNLVVGASDGV
NTTNINVTLTELDVNEGPEFNPPAGETSYSFNYLENSSDSTVIGTVAATDPEGKDVSYSIVSGDTNGWFEIDPVTGIISLTPAGVAAVANDFEALANVHNLVVGASDGVNTTNINVTLTELDVNEGPEFTPPAGETSYSFNYLENSTDSTVIGTVAATDPEGKDVSYSIVSGDSNGWFEIDPVTGVISLT
PAGVAAVANDFEALANVHNLVVGASDGVNTTNINVTLTELDVNEGPEFTPPAGETSYSFNYLENSSDSTVIGTVAATDPEGKDVSYSIVSGDSNGWFEIDPVTGVISLTPAGVAAVANDFEALANVHNLVVGASDGVNTTNINVTLTELDVNEGPEFTPPAGETSYSFNYLENSSDSTVIGTVAATDPEG
KDVSYSIVSGDSNGWFEIDPVTGVISLTPAGVAAVANDFEALANVHNLVVGASDGVNTTNINVTLTELDVNEGPEFTPPAGETSYSFNYLENSSDSTVIGTVAATDPEGKDVSYSIVSGDTNGWFEIDPVTGVISLTPAGVAAVANDFEALANVHNLVVGASDGVNTTNINVTLTELDVNEGPEFTPPAG
ETSYSFNYLENSSDSTVIGTVAATDPEGKDVSYSIVSGDSNGWFEIDPVTGVISLTPAGVAAVANDFEALANVHNLVVGASDGVNTTNINVTLTELDVNEGPEFNPPAGETSYSFNYLENSSDSTVIGTVAATDPEGKDVSYSIVSGDTNGWFEIDPVTGIISLTPAGVAAVANDFEALANVHNLVVGAS
DGVNTTNINVTLTELDVNEGPEFTPPAGETSYSFNYLENSSDSTVIGTVVATDPEGKDVSYSIVSGDSNGWFEIDPVTGVISLTPAGVAAVANDFEALANVHNLVVGASDGVNTTNINVTLTELDVNEGPEFTPPAGETSYSFTYLENSSDSTVIGTVAATDPEGKDVSYSIVSGDSNGWFEIDPVTGVI
SLTPAGVAAVANDFEALANVHNLVVGASDGVNTTNINVTLTELDVNEGPEFNPPAGETSYSFNYLENSSDSTVIGTVAATDPEGKDVSYSIVSGDTNGWFEIDPVTGIISLTPAGVAAVANDFEALANVHNLVVGASDGVNTTNINVTLTELDVNEGPEFTPPAGETSYSFNYLENSSDSTVIGTVVATD
PEGKDVSYSIVSGDSNGWFEIDPVTGVISLTPAGVAAVANDFEALANVHNLVVGASDGVNTTNINVTLTELDVNEAPVIVDYRSTINDSIANGTDVYNVNEANTGNDTDIDGDTLSYSFVLANGSNSLISEDGAFIINAQTGVISVNDTTKIDYDNGSQINLNVETSDGSLTDTAIVTFDLNNVDANDDL
PGTSFSVTAGATNAWTIPQSNGESLMKISARTADGSMGVVNIESGSNKLGVAGSPRTSGQIAGQIEYDSATGTSESIVIDFNGLVNQATFSVSNMFSNENNGEQGVWKAYYNGQLVASDTFKTTSGDAGTFSIDTGNIVFDQLVFEATKTISEANGGAALVDSSDYFLTNVTASGPAIMGTYLVSEDGVL
TISSTSQGLLNNDSDAQTNTFALTGVNGAIVTDGQVVILPSGALLTIHSDGTYSYDTNDSFEALTAGQLATDTFTYTVTDQYGATDTATVTINIVGEADASSTYVSYNGNPGNDVIKGTPNNDIIVSDQQGLQIVAGENYNIAFILDTSGSMSNLIASAKLQLESVFNSLADSATGSHSGVVNVLLTNFA
TGSNISISVNMDDPNAVQSLVSKLNSLSANGWTNYEAGFDAAINWFSSSTVQQNVGHNLSFFITDGTVNRSTIETDITKILIGYDVNASQYVSLSSLMGSNYSKGTILKFDGKLVVDANGNVYSIYTGKTLGKMTFTSNGKFASYSDTDSTSTTNTQNEALHAFNLLAAVSEVEAISLKAADGSTPVGEA
NLKLYDTDGNVRASIDVSDLSSIITGSETLQSQGDDNTVGNQGDDIIFGDLVRFSGSSEQGYVALQTYVADKTGQNVGDVDVRAVHDYIRDHVNEFNINNQNDGNDILDGGIGDDILFGQGGNDVIYGGEGNDVLIGGLGNDTLIGGLGNDTFVWSKGDTGTDTIKDFEVNNDSLHISDLLQNEQNGDLD
NYLDFSFNNGSTTISIDADHNGSIDQVIVLDGVDLSQEYGSTTDGVIINGLLNDGALIVDTATVNPAPSPGTSHADLFDQHNGNIIP
Molecular weight: 594.48 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|Q07VS3|RL34_SHEFN 50S ribosomal protein L34
MSKRTFQPSNLKRKRSHGFRARMATVGGRKVLARRRAKGRARLSA
Molecular weight: 5.15 kDa
Isoelectric point according different methods:





General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3,963

27

3,990

1,336,787

36

5,787

337.3

37.4 kDa
Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

8.94

1.03

5.69

5.46

4.07

6.63

2.3

6.67

5.08

10.48

2.67

4.49

4.99

3.86

4.21

6.74

5.57

6.89

1.18

3.03
Note: For statistics only major isoforms were used (in this case 3,963 proteins)
For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI: proteome isoelectric point database. Nucleic Acids Res. 2016. doi: 10.1093/nar/gkw978       Contact: Lukasz P. Kozlowski