Potato virus T (isolate Chenopodium amaranticolor/Peru/-/1992) (PVT)
Taxonomy:
Average proteome isoelectric point is 6.82
Get precalculated fractions of proteins
Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
All
Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC_method)
Get csv file with sequences according given criteria:
* You can choose from 18 different methods for calculating isoelectric point
Protein with the lowest isoelectric point: >tr|B5ACE2|B5ACE2_PVT92 Replicase
MSFSFRTPAELFVQSLPKEYAEACFKSHAANFQIRSDKGVGLFDFACSSVVKERLTKAGIPVSAFCNQEHSHPASKMIENHLLYNILPNYLNLKNYTAISIKDSKVRKLLKNGVDSLETFNRLFSCKDALRYVDPETCDMDKFIARVHHSTRIFLFDELHYWSMNSLSDFLDRSNVKELLATIVFPIEIL LGSKRSLNPELYEFEISRGKLHFFPDGCTSESYSQPKDCDILKVNRIVTKTGKIFSVELIHTIGANHMVMIKEGSFDVDSERFFDRSSALTTSLLMPTRAGKALRIRRKFLLRLIIYLFSLKKPDHHSAIAKIRQSSDDSIFCDEIMLADHVGKIFEKLDPASPFGVKGVFDLLTSIFKDIFLLDGLFNW SDRRKSEKFVEFMRALDYQTNKVVTCTFSGGVMRSGFLAEFFLDNDCEASEGLDEVISRFDTFFDPKKEYSAHALRVNIKDRTPNPYGPMKARTPSVVLHREYITKVEFSSKAKKVNVLKERLTGEVSFEEARLQRMRYSDSQFVAGLAPKLRYVKMLTWKKDQKLFSEFPSEESNEVEMEDAFELRKGR TLKRGTKERDEDGANSEECEQLDSEDDVGSFDYEETKADSYEIDFEAILNRVNSGGLRGVCLLDALAKITGTKREITLSILLGRDGTWADWFLKDKGATFDDVFKAVSDLDLNCTICTKEGSFNAHVNRNYKHNFLYLFDEHVSLERPKVMLFEQVRHQKIDFLGAFEKCPGAGKFRYEALAERGSLLAS ALKDNLTGVISSKFNWDPKCEFVDIEKEILVVAGFAGSGKTRGICQIVKSMFNNKKTLVLSPRKNLADDWVKNLANLHRPSHVKVMTFEAGLRRVQKSSLIVIDELSLMPNGYLDMLINMNEEATFITLFDPLQARYHAKSDVLRVSPENDVDRIKVPKYLFFSKRMSSELDFFDVRCSSDQKKWELHGK QYREPAALFRDIKGQEFTILSPSFETAREMSKYADIKDGCKSMTFGESQGLTVNKAVIVVDQDLVATSVLHWIVALTRSRQGFVILVHKVFDMKTLIQPVQNSIIGLVLRGVKVQENIFINTAGKCLSEAEIVEELETFKRTEEDEDLLEGDPWLKGQLFLCQSVELDEVTPEEPLRHESPPRTHLPLPV EGLTPLLMSNVKAREDREFITPSGWSKQFRDDKENVDWRNVSYADAFETIYPKHEASDDITLWAAIQKRIVMADPFRNAMKLQKVEPISAEIFNEMNKILLLNPHVSVDRDQVYKEFLRKRLNKSKKLIESHSERSSDDWPIDHFFLFMKSQLCTKFEKRFVDAKAGQTLACFSHKLLTRFGPAFREFEK KFTANLPPSWYIHTMKNFDQLNNWVINYVDQEEGTESDYEAFDRSQDAIILGLEIECLKLFGWDQDLIDDYRKLKLRMGCRWGAIAIMRFTGEFGTFFFNTIANIAFTCLRYNITRDTVIAFAGDDMYASGKLEIRKDREDLLAHLTLKAKVQFTEKPMFCGWYIKKMGIVKEPRLVLERWLIAERKKVI DQCFINYSIEVSYGYRLGEYLWEYFDNLEDFQAIVRLVIKKKKQLPPAIRRIFETSNGVDFSGEVQETMGGEGEHHGSCGLWCNLH
Molecular weight: 184.83 kDa
Isoelectric point according different methods: Bjellqvist 6.440 DTASelect 6.868 Dawson 6.427 EMBOSS 6.854 Grimsley 6.504 IPC_peptide 6.440
IPC_protein 6.122 Lehninger 6.415 Nozaki 6.707 Patrickios 4.482 ProMoST 6.465 Rodwell 6.415
Sillero 6.795 Solomon 6.427 Thurlkill 6.883 Toseland 6.389 Wikipedia 6.427 Avg_pI 6.536 Protein with the highest isoelectric point: >tr|B5ACE3|B5ACE3_PVT92 Movement protein
MELISVEKFRRQWEERESITGPVDSGAIYTNSAFHNLKTKWHVYKSECSIGLDLPDNGKIISKDIPLFDQEEIDNIMKDDKQVFVHLGAFVFGLVAHFPVDEEVEGLVSIIDKRRTDLRRATLACRKIKFVNGRCAFMMKPNFSVRKEDLRDGDTFCAAIKIKNLGFEGGFFPFSACGGVIYRTSNVSFA HAVDKTFASRTVHDLVGTDILSLDQLDRATLEDLEEVRRSPILRLTAPDERVMIERGNWFQKKPAIRRRSFGKRRPQKSSSVRSASLPRFSCSERLERGFESESLAGLVLDQKYGPNNFCADKRRSPESDSGSLQQSMGRSSHSGSEGWGKGTDVAIPLRKNRNIFSE
Molecular weight: 40.48 kDa
Isoelectric point according different methods: Bjellqvist 8.990 DTASelect 8.770 Dawson 8.843 EMBOSS 9.063 Grimsley 7.966 IPC_peptide 8.990
IPC_protein 7.980 Lehninger 8.990 Nozaki 9.311 Patrickios 5.270 ProMoST 8.551 Rodwell 8.960
Sillero 9.180 Solomon 8.990 Thurlkill 8.916 Toseland 8.141 Wikipedia 8.814 Avg_pI 8.778
General Statistics
Number of major isoforms
Number of additional isoforms
Number of all proteins
Number of amino acids
Min. Seq. Length
Max. Seq. Length
Avg. Seq. Length
Avg. Mol. Weight
3
0
3
2,177
213
1,606
725.7
83.0 kDa
Amino acid frequency
Ala
Cys
Asp
Glu
Phe
Gly
His
Ile
Lys
Leu
Met
Asn
Gln
Pro
Arg
Ser
Thr
Val
Trp
Tyr
6.29
1.79
6.8
7.3
6.61
5.37
2.02
5.93
7.63
9.37
2.39
3.95
2.85
3.49
6.29
7.67
4.59
5.93
1.38
2.34
Note: For statistics only major isoforms were used (in this case 3 proteins)
For dipeptide frequency statistics click
here