Proteome-pI - Proteome Isoelectric Point Database statistics

Shewanella violacea (strain JCM 10179 / CIP 106290 / LMG 19151 / DSS12)

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella; Shewanella violacea

Average proteome isoelectric point is 6.32

Get precalculated fractions of proteins

Acidic

pI < 6.8

6.8-7.4

pI > 7.4

Basic

All

Virtual 2D-PAGE plot for 4,336 proteins (isoelectric point calculated using IPC_method)

Get csv file with sequences according given criteria:

* You can choose from 18 different methods for calculating isoelectric point

Protein with the lowest isoelectric point:

>tr|D4ZCS1|D4ZCS1_SHEVD RTX toxin  putative 

MIMGVSVTEQDAVVTNLVGQLKAKDEQGNIRDVTIGDLIKDGEQLIFAPNSQFILHMADGTIITETNFSEPIPESSLGAAPELATAPVSADAEIAALQAQILAGDDPTAGLPETAAGTAAGGGGNQGGSDYITLGRTGDETLAGSGYDTAGFALAPAPTEDPVILTAELPEPPTIDASSVTLLEANLLQG
SNPLAAALEQSNSLQVGAQTGISALTINGIDIFIGGLFVGPITLTTDNGVLVITSFDAVTGTLNYNFTLDTDVDNSASDTLSQIFTTLVTDLAGITTASTITVNIIDDSPNAVDDSNTVSENGDIAIVITGNVLANDTQGADSAVVSQISNTDVATQAIAATTNISGDFGLLQISADGSYTYQLDNSLGN
VQALAQGELVTETFTYQLADSDGDTVAATLTITITGTNDIPVIVVIDPDVPVDPDNPVDPILGAEGLVVEAGNEDDGTVVSGVLNTTGLFEPADVDNGAVLVWSGDATGSLGSFTIDPVTGEWSYTLDNSLADSLAEGDTVQEIFIVTVTDEFDATATQQVTITVQGTNDSPIITSSDAAATGTVVEAST
LDDETLDPGIPQTSGLLTATDVDNGAQLSWSGNSAGTYGSFSIDSASGSWVYNLDNDLADSLAEGEVILEEFLVTVTDEFGATDTQLVTITVIGTNDAPQITSTSEDAEGVVIETGNADNGTVLPGVLISTGTLDAGDIDNNAVLIFSGSTDGSFGSFFIDPVTGEWTYTLDDSLADSFAEGQSTEEVFL
VTVTDEFGLTSTQNVTITVQGTNDSPIIFLDEGDSASGTVIESGSEDDGVFIPGIDVINGTLSVEDVDTIIADNPIWSFTPQSNNYGVFNLNSTTGEWTYNLNNNLADPLAEGESAEETFLVTVTDEFGATDTQLVTITVQGTNDLPILTVDIEGGVTKDANNTTLSDSGILSFTDVDTSNTHSVSEDYN
QDIDWSNGDITSVLTQGEITSLIDGFSVDSNSWDYSIANSLVQFLGADETITLSFEVTVTDNDDGTDTETVSITIFGTNSLPELTVEGTGAVLEDFTNPDLNDFGAISFTDADVSDTHEVTEEYKGDIFWTGGTLSNQLIAQDIDILIDGFTVDDDNWDYTIPNALVQFLAVGETITLSFDVTVTDNRGG
SDTEPVTITITGTNDIPIITSSGGAHLGSVKEEGVVDDFDNDPNNNNTPADAVLQTGGTVTAEDADHNAILTWSGDESGTYGEFTIDSVSGEWVYALNDSVLVNALASGESHDEIFTVTVTDEFGATDTQNITVTVNGTNDIPVITSSGAAHLGSVKEEGVVDDFDNDPNNNNAPADAVLQTGGTVTAED
ADNNSSLAWSGDDSGTYGEFTIDSVSGEWVYALNDSVLVNALASGESHDEIFTVTVTDEFGATDTQNITVTVNGTNDIPVITSSGAAHLGSVKEEGVVDDFDNDPNNNNAPADAVLQTGGTVTAEDADNNSSLAWSGDDSGTYGEFTIDSVSGEWVYALNDSVLVNALASGESHDEIFTVTVTDEFGATD
TQNITVTVNGTNDIPVITSSGAAHLGSVKEEGVVDDFDNDPNNNNTPADAVLQTGGTVTAEDADNNSSLAWSGDDSGTYGEFTIDSVSGEWVYALNDSVLVNALASGESHDEIFTVTVTDEFGATDTQNITVTVNGTNDIPVITSSGAAHLGSVKEEGVVDDFDNDPNNNNTPADAVLQTGGTVTAEDAD
NNSSLAWSGDDSGTYGEFTIDSVSGEWVYALNDSVLVNALASGESHDEIFTVTVTDEFGATDTQNITVTVNGTNDIPVITSSGAAHLGSVKEEGVVDDFDNDPNNNNAPADAVLQTGGTVTAEDADNNSSLAWSGDDSGTYGEFTIDSVSGEWVYALNDSVLVNALASGESHDEIFTVTVTDEFGATDTQ
NITVTVNGTNDIPVITSSGAAHLGSVKEEGVVDDFDNDPNNNNTPADAVLQTGGTVTAEDADNNSSLAWSGDDSGTYGEFTIDSVSGEWVYALNDSVLVNALASGESHDEIFTVTVTDEFGATDTQNITVTVNGTNDIPVITSSGAAHLGSVKEEGVVDDFDNDPNNNNAPADAVLQTGGTVTAEDADNN
SSLAWSGDDSGTYGEFTIDSVSGEWVYALNDSVLVNALASGESHDEIFTVTVTDEFGATDTQNITVTVNGTNDIPVITSSGAAHLGSVKEEGVVDDFDNDPNNNNTPADAVLQTGGTVTAEDADNNSSLAWSGDDSGTYGEFTIDSVSGEWVYALNDSVLVNALASGESHDEIFTVTVTDEFGATDTQNI
TVTVNGTNDIPVITSSGAAHLGSVKEEGVVDDFDNDPNNNNTPADAVLQTGGTVTAEDADNNSSLAWSGDESGTYGEFTIDSVSGEWVYVLNDSVLVNALASGESHDEIFTVTVTDEFGATDTQNITVTVNGTNDIPILTIDDLTGGITEDDTDPNLNVVGTLSFTDVDNNDTPSIDTAPVGDVIWSGGD
LTPGQIIDLIAGFSVDTSSWDYTIANSLVQFLAENETITLNFDVTVTDDFGATDTETVVITITGINDAPIVEGISSLLVSEEGLTGGIIDTDGDPSDDTDAISHMGTLTFTDAENPADNSFTVSLIAPISSAFSAGEEVIWQWDGSNILTGRTEFSDTLVMTVTLGTVSSALSVYSVSYTLDLFAPLDHP
VNSTEDLLSIDFGVNIFDGFDNVATTLNAIIEDDSPVDEVDELLMQAMTNAVSEFVTGDLFDPGADGLGSITFTVETSGLTYNGTPLVYNMSGNILTASADGTDVFTVTAILDIDGHYDYKLEILQILDAGVSVEYDLSSAPAGNNAAYYVDVDGQIYSQDNQTTMTIATITGTDGGASSSINSNNHGIG
VGPQTSISTDEAILFVYGTNGASLAAVSLGNNNNGNHTGTAEISYLVSYTDNTNSGPILATINGTLDIEIIAENNLNIASIEITYLSGNDFQIIGLSSIDVLLQDPINIELSYTATDADGDSVIFDTPDEGHFFVTLDPIPQPSMHMGSALDDVLIDGQGDSYLIGGIGSDSLDGGADTDRDIFVWDLGS
DDGSTDTVYNFDSSYDALNLAEILVGEDNTAISLDDYLDFNFVNGNTEIYVDSDGLVGGVNLDLTIIIDGVDLSTIYAPGDIAIIDGLLTDNALIIDTIP

Molecular weight: 326.1 kDa
Isoelectric point according different methods:

Protein with the highest isoelectric point:

>tr|D4ZD79|D4ZD79_SHEVD 50S ribosomal protein L34 

MSKRTFQPSNLKRKRSHGFRARMATVGGRKVLARRRAKGRARLSA

Molecular weight: 5.15 kDa
Isoelectric point according different methods:

General Statistics

Number of major isoforms	Number of additional isoforms	Number of all proteins	Number of amino acids	Min. Seq. Length	Max. Seq. Length	Avg. Seq. Length	Avg. Mol. Weight
4,330	6	4,336	1,349,218	30	5,059	311.6	34.5 kDa

Amino acid frequency

Ala	Cys	Asp	Glu	Phe	Gly	His	Ile	Lys	Leu	Met	Asn	Gln	Pro	Arg	Ser	Thr	Val	Trp	Tyr
8.55	1.02	5.78	5.9	4.02	6.95	2.16	6.61	5.33	10.66	2.67	4.23	4.44	3.8	4.32	7.22	5.43	6.64	1.19	3.08

Note: For statistics only major isoforms were used (in this case 4,330 proteins)
For dipeptide frequency statistics click here

See this proteome in:

Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI: proteome isoelectric point database. Nucleic Acids Res. 2016. doi: 10.1093/nar/gkw978

Contact: Lukasz P. Kozlowski