Newcastle disease virus (strain Chicken/United States/B1/48) (NDV)
Average proteome isoelectric point is 6.83
Get precalculated fractions of proteins
Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
All
Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC_method)
Get csv file with sequences according given criteria:
* You can choose from 18 different methods for calculating isoelectric point
Protein with the lowest isoelectric point: >sp|Q77K03|NCAP_NDVB1 Nucleoprotein
MSSVFDEYEQLLAAQTRPNGAHGGGEKGSTLKVDVPVFTLNSDDPEDRWSFVVFCLRIAVSEDANKPLRQGALISLLCSHSQVMRNHVALAGKQNEATLAVLEIDGFANGTPQFNNRSGVSEERAQRFAMIAGSLPRACSNGTPFVTAGAEDDAPEDITDTLERILSIQAQVWVTVAKAMTAYETADESE TRRINKYMQQGRVQKKYILYPVCRSTIQLTIRQSLAVRIFLVSELKRGRNTAGGTSTYYNLVGDVDSYIRNTGLTAFFLTLKYGINTKTSALALSSLSGDIQKMKQLMRLYRMKGDNAPYMTLLGDSDQMSFAPAEYAQLYSFAMGMASVLDKGTGKYQFAKDFMSTSFWRLGVEYAQAQGSSINEDMAA ELKLTPAARRGLAAAAQRVSEVTSSIDMPTQQVGVLTGLSEGGSQALQGGSNRSQGQPEAGDGETQFLDLMRAVANSMREAPNSAQGTPQSGPPPTPGPSQDNDTDWGY
Molecular weight: 53.02 kDa
Isoelectric point according different methods: Bjellqvist 5.410 DTASelect 5.563 Dawson 5.283 EMBOSS 5.207 Grimsley 5.143 IPC_peptide 5.283
IPC_protein 5.283 Lehninger 5.232 Nozaki 5.397 Patrickios 4.215 ProMoST 5.423 Rodwell 5.194
Sillero 5.474 Solomon 5.270 Thurlkill 5.232 Toseland 5.219 Wikipedia 5.156 Avg_pI 5.298 Protein with the highest isoelectric point: >sp|Q9DLD5|MATRX_NDVB1 Matrix protein
MDSSRTIGLYFDSAHSSSNLLAFPIVLQDTGDGKKQIAPQYRIQRLDLWTDSKEDSVFITTYGFIFQVGNEEATVGIIDDKPKRELLSAAMLCLGSVPNTGDLIELARACLTMMVTCKKSATNTERMVFSVVQAPQVLQSCRVVANKYSSVNAVKHVKAPEKIPGSGTLEYKVNFVSLTVVPKKDVYKIP AAVLKISGSSLYNLALNVTINVEVDPRSPLVKSLSKSDSGYYANLFLHIGLMTTVDRKGKKVTFDKLEKKIRSLDLSVGLSDVLGPSVLVKARGARTKLLAPFFSSSGTACYPIANASPQVAKILWSQTACLRSVKIIIQAGTQRAVAVTADHEVTSTKLEKGHTLAKYNPFKK
Molecular weight: 39.61 kDa
Isoelectric point according different methods: Bjellqvist 9.545 DTASelect 9.502 Dawson 9.853 EMBOSS 10.043 Grimsley 9.911 IPC_peptide 9.882
IPC_protein 8.756 Lehninger 9.853 Nozaki 9.736 Patrickios 7.600 ProMoST 9.341 Rodwell 10.335
Sillero 9.794 Solomon 9.882 Thurlkill 9.706 Toseland 9.633 Wikipedia 9.984 Avg_pI 9.735
General Statistics
Number of major isoforms
Number of additional isoforms
Number of all proteins
Number of amino acids
Min. Seq. Length
Max. Seq. Length
Avg. Seq. Length
Avg. Mol. Weight
8
0
8
5,000
179
2,204
625.0
68.9 kDa
Amino acid frequency
Ala
Cys
Asp
Glu
Phe
Gly
His
Ile
Lys
Leu
Met
Asn
Gln
Pro
Arg
Ser
Thr
Val
Trp
Tyr
7.46
1.68
5.16
4.82
3.2
6.04
2.02
6.0
5.14
10.04
2.5
4.64
4.34
5.16
5.04
9.2
7.36
6.28
0.84
3.08
Note: For statistics only major isoforms were used (in this case 8 proteins)
For dipeptide frequency statistics click
here