Tomato ringspot virus (isolate raspberry) (ToRSV)
Taxonomy: Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Secoviridae; Comovirinae; Nepovirus; Subgroup C; Tomato ringspot virus
Average proteome isoelectric point is 8.96
Get precalculated fractions of proteins
Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC_method)
Get csv file with sequences according given criteria:
* You can choose from 18 different methods for calculating isoelectric point
Protein with the lowest isoelectric point:
>sp|P25247|POL2_TORVR RNA2 polyprotein
MSSICFAGGNHARLPSKAAYYRAISDRELDREGRFPCGCLAQYTVQAPPPAKTQEKAVGRSADLQKGNVAPLKKQRCDVVVAVSGPPPLELVYPARVGQHRLDQPSKGPLAVPSAKQTSTAMEVVLSAEEAAITAPWLLRPCKGEAPPPPPLTQRQQFAALKKRLAVKGQQIIREHIRARKAAKYAAIAK
AKKAAALAAVKAAQEAPRLAAQKAAISKILRDRDVAALPPPPPPSAARLAAEAELASKAESLRRLKAFKTFSRVRPALNTSFPPPPPPPPARSSELLAAFEAAMNRSQPVQGGFSLPTRKGVYVAPTVQGVVRAGLRAQKGFLNAVSTGIVAGARILKSKSQNWFRRSMGIAHDYVEGCMASTVLGCAGP
VVQRQEACSVVAAPPIVEPVLWVPPLSEYANDFPKLTCSTFTEWQRPRKQSIAISNLFRKLIDRALLVSGVSLIASVLLFEIAENFAVRQAVCPVEMPSCATSVSEKSLVSLDEGNFYLRKYLSPPPYPFGRESFYFQARPRFIGPMPSMVRAVPQIVQQPTMTEELEFEVPSSWSSPLPLFANFKVNRG
ACFLQVLPQRVVLPDECMDLLSLFEDQLPEGPLPSFSWSSPLPLFANFKVNRGACFLQVLPQRVVLPDECMDLLSLFEDQLPEGPLPSFSWSSPLPLFASFKVNRGACFLQVLPARKVVSDEFMDVLPFLFSPLVSHQEEEPEMVPAVLEAADSVGDITEAFFDDLECESFYDSYSDEEEAEWAEVPRCK
TMSELCASLTLAGDAEGLRKSHGVFLKRLVTYLQSFEEPLYSSRAFYSVKVKPVYRPKKFEGHIDCTCLDGNMGEWEWRESVDAMWRCPGRLLNTKRTFTRDDWERVQYLRIGFNEGRYRRNWRVLNLEEMDLSLHEYPEISSAPVQSSLFSRVVDRGATLASSIPFVTRSNCQSSLGTPGLNVHTIHQE
APTTLRAPPFTGARNVMGSSDAGANAAPYRSEARKRWLSRKQEDSQEDNIKRYADKHGISFEEARAVYKAPKEGVPTQRSILPDVRDAYSARSAGARVRSLFGGSPTTRAQRTEDFVLTSPSAGDASSFSFYFNPVSEQEMAEQERGGNTMLSLDAVEVVIDPVGMPGDDTDLTVMVLWCQNSDDQRALI
GAMSTFVGNGLARAVFYPGLKLLYANCRVRDGRVLKVIVSSTNSTLTHGLPQAQVSIGTLRQHLGPGHDRTISGALYASQQQGFNIRATEQGGAVTFAPQGGHVEGIPSANVQMGAGEHLIQAGPMQWRLQRSQSSRFVVSGHSRTRGSSLFTGSVDRTQQGTGAFEDPGFLPPRNSSVQGGSWQEGTEA
AYLGKVTCAKDAKGGTLLHTLDIIKECKSQNLLRYKEWQRQGFLHGKLRLRCFIPTNIFCGHSMMCSLDAFGRYDSNVLGASFPVKLASLLPTEVISLADGPVVTWTFDIGRLCGHGLYYSEGAYARPKIYFLVLSDNDVPAEADWQFTYQLLFEDHTFSNSFGAVPFITLPHIFNRLDIGYWRGPTEID
LTSTPAPNAYRLLFGLSTVISGNMSTLNANQALLRFFQGSNGTLHGRIKKIGTALTTCSLLLSLRHKDASLTLETAYQRPHYILADGQGAFSLPISTPHAATSFLEDMLRLEIFAIAGPFSPKDNKAKYQFMCYFDHIELVEGVPRTIAGEQQFNWCSFRNFKIDDWKFEWPARLPDILDDKSEVLLRQH
PLSLLISSTGFFTGRAIFVFQWGLNTTAGNMKGSFSARLAFGKGVEEIEQTSTVQPLVGACEARIPVEFKTYTGYTTSGPPGSMEPYIYVRLTQAKLVDRLSVNVILQEGFSFYGPSVKHFKKEVGTPSATLGTNNPVGRPPENVDTGGPGGQYAAALQAAQQAGKNPFGRG
MSSICFAGGNHARLPSKAAYYRAISDRELDREGRFPCGCLAQYTVQAPPPAKTQEKAVGRSADLQKGNVAPLKKQRCDVVVAVSGPPPLELVYPARVGQHRLDQPSKGPLAVPSAKQTSTAMEVVLSAEEAAITAPWLLRPCKGEAPPPPPLTQRQQFAALKKRLAVKGQQIIREHIRARKAAKYAAIAK
AKKAAALAAVKAAQEAPRLAAQKAAISKILRDRDVAALPPPPPPSAARLAAEAELASKAESLRRLKAFKTFSRVRPALNTSFPPPPPPPPARSSELLAAFEAAMNRSQPVQGGFSLPTRKGVYVAPTVQGVVRAGLRAQKGFLNAVSTGIVAGARILKSKSQNWFRRSMGIAHDYVEGCMASTVLGCAGP
VVQRQEACSVVAAPPIVEPVLWVPPLSEYANDFPKLTCSTFTEWQRPRKQSIAISNLFRKLIDRALLVSGVSLIASVLLFEIAENFAVRQAVCPVEMPSCATSVSEKSLVSLDEGNFYLRKYLSPPPYPFGRESFYFQARPRFIGPMPSMVRAVPQIVQQPTMTEELEFEVPSSWSSPLPLFANFKVNRG
ACFLQVLPQRVVLPDECMDLLSLFEDQLPEGPLPSFSWSSPLPLFANFKVNRGACFLQVLPQRVVLPDECMDLLSLFEDQLPEGPLPSFSWSSPLPLFASFKVNRGACFLQVLPARKVVSDEFMDVLPFLFSPLVSHQEEEPEMVPAVLEAADSVGDITEAFFDDLECESFYDSYSDEEEAEWAEVPRCK
TMSELCASLTLAGDAEGLRKSHGVFLKRLVTYLQSFEEPLYSSRAFYSVKVKPVYRPKKFEGHIDCTCLDGNMGEWEWRESVDAMWRCPGRLLNTKRTFTRDDWERVQYLRIGFNEGRYRRNWRVLNLEEMDLSLHEYPEISSAPVQSSLFSRVVDRGATLASSIPFVTRSNCQSSLGTPGLNVHTIHQE
APTTLRAPPFTGARNVMGSSDAGANAAPYRSEARKRWLSRKQEDSQEDNIKRYADKHGISFEEARAVYKAPKEGVPTQRSILPDVRDAYSARSAGARVRSLFGGSPTTRAQRTEDFVLTSPSAGDASSFSFYFNPVSEQEMAEQERGGNTMLSLDAVEVVIDPVGMPGDDTDLTVMVLWCQNSDDQRALI
GAMSTFVGNGLARAVFYPGLKLLYANCRVRDGRVLKVIVSSTNSTLTHGLPQAQVSIGTLRQHLGPGHDRTISGALYASQQQGFNIRATEQGGAVTFAPQGGHVEGIPSANVQMGAGEHLIQAGPMQWRLQRSQSSRFVVSGHSRTRGSSLFTGSVDRTQQGTGAFEDPGFLPPRNSSVQGGSWQEGTEA
AYLGKVTCAKDAKGGTLLHTLDIIKECKSQNLLRYKEWQRQGFLHGKLRLRCFIPTNIFCGHSMMCSLDAFGRYDSNVLGASFPVKLASLLPTEVISLADGPVVTWTFDIGRLCGHGLYYSEGAYARPKIYFLVLSDNDVPAEADWQFTYQLLFEDHTFSNSFGAVPFITLPHIFNRLDIGYWRGPTEID
LTSTPAPNAYRLLFGLSTVISGNMSTLNANQALLRFFQGSNGTLHGRIKKIGTALTTCSLLLSLRHKDASLTLETAYQRPHYILADGQGAFSLPISTPHAATSFLEDMLRLEIFAIAGPFSPKDNKAKYQFMCYFDHIELVEGVPRTIAGEQQFNWCSFRNFKIDDWKFEWPARLPDILDDKSEVLLRQH
PLSLLISSTGFFTGRAIFVFQWGLNTTAGNMKGSFSARLAFGKGVEEIEQTSTVQPLVGACEARIPVEFKTYTGYTTSGPPGSMEPYIYVRLTQAKLVDRLSVNVILQEGFSFYGPSVKHFKKEVGTPSATLGTNNPVGRPPENVDTGGPGGQYAAALQAAQQAGKNPFGRG
Molecular weight: 206.8 kDa
Isoelectric point according different methods:
Isoelectric point according different methods:
Protein with the highest isoelectric point:
>sp|P25246|YR22_TORVR Uncharacterized protein in RNA2
MPCLSAYLLMLSSWESSCLRLSQRLRASERYGAAFAPASEDPITLRAPVKGGARNVVGASWCIVCTFKPGVPREDWQLERVTKGILLAKVAPLSTTLEKREDCTGADEISGYSCKERSISSRFKTRQFRRYLPSLKPMRKYCTRSQSSRVNVRFVLSKRPGQRHIASTLSRHSHSPILPSRQVQSICPSN
FLGR
MPCLSAYLLMLSSWESSCLRLSQRLRASERYGAAFAPASEDPITLRAPVKGGARNVVGASWCIVCTFKPGVPREDWQLERVTKGILLAKVAPLSTTLEKREDCTGADEISGYSCKERSISSRFKTRQFRRYLPSLKPMRKYCTRSQSSRVNVRFVLSKRPGQRHIASTLSRHSHSPILPSRQVQSICPSN
FLGR
Molecular weight: 21.81 kDa
Isoelectric point according different methods:
Isoelectric point according different methods:
General Statistics
Number of major isoforms |
Number of additional isoforms |
Number of all proteins |
Number of amino acids |
Min. Seq. Length |
Max. Seq. Length |
Avg. Seq. Length |
Avg. Mol. Weight |
|---|---|---|---|---|---|---|---|
0 |
4,474 |
194 |
2,197 |
1118.5 |
123.2 kDa |
Amino acid frequency
Ala |
Cys |
Asp |
Glu |
Phe |
Gly |
His |
Ile |
Lys |
Leu |
Met |
Asn |
Gln |
Pro |
Arg |
Ser |
Thr |
Val |
Trp |
Tyr |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
9.86 |
2.08 |
4.29 |
5.34 |
4.65 |
7.24 |
1.83 |
4.11 |
4.94 |
9.72 |
2.17 |
3.08 |
4.11 |
6.1 |
6.71 |
8.14 |
4.38 |
7.0 |
1.25 |
3.0 |
For dipeptide frequency statistics click here
See this proteome in:
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here
Reference: Kozlowski LP. Proteome-pI: proteome isoelectric point database. Nucleic Acids Res. 2016. doi: 10.1093/nar/gkw978  |
Contact: Lukasz P. Kozlowski |